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nf-cmgg / structural

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
https://nf-cmgg.github.io/structural/
MIT License
18 stars 3 forks source link

Finish Scramble #9

Open nvnieuwk opened 1 year ago

nvnieuwk commented 1 year ago

Modules: Scramble Subworkflows: RUN_SCRAMBLE GATK-SV: Scramble.wdl

This workflow needs to be properly added and fixed => Main issue here is the lack of a proper dataset (but should be fixed with Mathias' data)

nvnieuwk commented 1 year ago

Still isn't working with the new dataset...