search

nf-core / airrflow

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
https://nf-co.re/airrflow
MIT License
52 stars 34 forks source link

Fastq samplesheet auto single_cell FALSE #201

Closed ggabernet closed 8 months ago

ggabernet commented 1 year ago

Description of the bug

As input samplesheet only supports single_cell FALSE, autogenerate this instead of requiring column in samplesheet.

Command used and terminal output

No response

Relevant files

No response

System information

No response

ggabernet commented 8 months ago

THis might not be needed / wanted any more, as we want to allow for Fastq input for single-cell as well.