Closed skose82 closed 1 year ago
M1/M2 isnt really supported, but it would be certainly great if the pipeline would work on that as well. (nf-core) pipelines are targeting workstations/hpc/cloud, and the M1/2 chips arent really used in that environments afaik, laptops are just for tests or development. Conda should work mostly on M1/M2 chips, as it did for you.
Pipeline finishes with no plots/analysis with qiime2 (e.g. ancom, barplot, rarefacation_tables) only taxonomy folder present.
However, QIIME2 has only a docker image, no conda package, so with conda there cannot be and QIIME2 ouptut, so thats not a bug.
The software dump process fails but assume plots were completed before this step.
The process CUSTOM_DUMPSOFTWAREVERSIONS
comes straight from the nf-core template (even if it contains "custom"). Probably it would be best to discuss this in the nf-core slack
channel help
to get more knowledgeable people in that matter to help you?
I'll close that issue, please feel free to open other issues if needed (and you did already).
Description of the bug
Pipeline finishes with no plots/analysis with qiime2 (e.g. ancom, barplot, rarefacation_tables) only taxonomy folder present. The software dump process fails but assume plots were completed before this step. Command run with conda.
Command used and terminal output
Relevant files
No response
System information
nextflow 22.10.4 nf-core/ampliseq v2.4.1 Desktop MacOS/M2 Conda