Barrnap doesn't get called with fasta input

nf-core / ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

https://nf-co.re/ampliseq

MIT License

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Barrnap doesn't get called with fasta input #533

Closed erikrikarddaniel closed 1 year ago

erikrikarddaniel commented 1 year ago

Description of the bug

The barrnap step is only triggered for read input. I see no reason not to run it when the input is a fasta file as it's just checking that sequences look like they should.

Command used and terminal output

No response

Relevant files

No response

System information

nf-core/ampliseq 2.4.1

d4straub commented 1 year ago

That was solved in https://github.com/nf-core/ampliseq/pull/535