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nf-core / ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2
https://nf-co.re/ampliseq
MIT License
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The pipeline has been running and staying on the interface #587

Closed freemutation closed 1 year ago

freemutation commented 1 year ago

Description of the bug

After starting the command, when it runs to the process of "AMPLISEQ:FORMAT_TAXONOMY", this state will remain unchanged. This interface is always maintained permanently if I don’t take the initiative to end this command . In fact, I used the data in the test to run the pipeline (https://github.com/nf-core/test-datasets/tree/ampliseq/testdata). The size of the data is very small. Can you help me explain what this is caused and how to solve this issue? Thanks in advance.

Command used and terminal output

sh /home/liuzhenwei/software/bin/nextflow run /home/liuzhenwei/software/nf-core-ampliseq-2.5.0/workflow/ -profile singularity --input "./Samplesheet_test.tsv"  --FW_primer GTGYCAGCMGCCGCGGTAA --RV_primer GGACTACNVGGGTWTCTAAT  --metadata "./Metadata.tsv" --outdir ./results
N E X T F L O W  ~  version 23.04.1
Launching `/home/liuzhenwei/software/nf-core-ampliseq-2.5.0/workflow/main.nf` [sad_murdock] DSL2 - revision: be36b18b01

------------------------------------------------------
                                        ,--./,-.
        ___     __   __   __   ___     /,-._.--~'
  |\ | |__  __ /  ` /  \ |__) |__         }  {
  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                        `._,._,'
  nf-core/ampliseq v2.5.0
------------------------------------------------------
Core Nextflow options
  runName           : sad_murdock
  containerEngine   : singularity
  launchDir         : /home/liuzhenwei/test
  workDir           : /home/liuzhenwei/test/work
  projectDir        : /home/liuzhenwei/software/nf-core-ampliseq-2.5.0/workflow
  userName          : liuzhenwei
  profile           : singularity
  configFiles       : /home/liuzhenwei/software/nf-core-ampliseq-2.5.0/workflow/nextflow.config

Main arguments
  input             : ./Samplesheet_test.tsv
  FW_primer         : GTGYCAGCMGCCGCGGTAA
  RV_primer         : GGACTACNVGGGTWTCTAAT
  metadata          : ./Metadata.tsv
  outdir            : ./results

Institutional config options
  custom_config_base: /home/liuzhenwei/software/nf-core-ampliseq-2.5.0/workflow/../configs/

!! Only displaying parameters that differ from the pipeline defaults !!
------------------------------------------------------
If you use nf-core/ampliseq for your analysis please cite:

* The pipeline publication
  https://doi.org/10.3389/fmicb.2020.550420

* The pipeline
  https://doi.org/10.5281/zenodo.1493841

* The nf-core framework
  https://doi.org/10.1038/s41587-020-0439-x

* Software dependencies
  https://github.com/nf-core/ampliseq/blob/master/CITATIONS.md
------------------------------------------------------
WARN: No DADA2 cutoffs were specified (`--trunclenf` & `--trunclenr`), therefore reads will be truncated where median quality drops below 25 (defined by `--trunc_qmin`) but at least a fraction of 0.75 (defined by `--trunc_rmin`) of the reads will be retained.
The chosen cutoffs do not account for required overlap for merging, therefore DADA2 might have poor merging efficiency or even fail.

[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES                     -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC                                    -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC          -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD    -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE  -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES                     -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC                                    -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC          -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD    -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE  -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN              -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM       -
executor >  local (2)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)        [  0%] 0 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC                                    -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC          -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD    -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE  -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN              -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM       -
executor >  local (6)
[82/b2c980] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1a)       [  0%] 0 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC                                    -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC          -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD    -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE  -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN              -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM       -
executor >  local (6)
[6f/221111] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_2)        [ 25%] 1 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC                                    -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC          [  0%] 0 of 1
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD    -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE  -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN              -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM       -
executor >  local (8)
[82/b2c980] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1a)           [ 50%] 2 of 4
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                           [  0%] 0 of 1
[88/74550a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_2) [  0%] 0 of 1
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE      -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1            -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                  -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM           -
executor >  local (8)
[82/b2c980] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1a)           [ 50%] 2 of 4
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                           [  0%] 0 of 2
[88/74550a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_2) [  0%] 0 of 1
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE      -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1            -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                  -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM           -
executor >  local (9)
[82/b2c980] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1a)           [ 50%] 2 of 4
[6e/ce48a6] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1a)                          [  0%] 0 of 2
[88/74550a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_2) [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE      -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1            -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                  -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM           -
executor >  local (10)
[82/b2c980] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1a)            [ 50%] 2 of 4
[6e/ce48a6] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1a)                           [  0%] 0 of 2
[f8/65fca5] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1a) [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                   -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM            -
executor >  local (10)
[82/b2c980] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1a)            [ 50%] 2 of 4
[6e/ce48a6] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1a)                           [  0%] 0 of 2
[f8/65fca5] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1a) [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                   -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM            -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2             -
executor >  local (14)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)             [100%] 4 of 4 ✔
[c6/2623ce] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1)                            [  0%] 0 of 4
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)  [  0%] 0 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                   -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM            -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2             -
executor >  local (14)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)             [100%] 4 of 4 ✔
[c6/2623ce] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1)                            [  0%] 0 of 4
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)  [  0%] 0 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                   -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM            -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                      -
executor >  local (14)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)             [100%] 4 of 4 ✔
[c6/2623ce] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1)                            [  0%] 0 of 4
[f8/65fca5] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1a) [ 25%] 1 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                   -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM            -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                      -
executor >  local (14)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)             [100%] 4 of 4 ✔
[c6/2623ce] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1)                            [  0%] 0 of 4
[88/74550a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_2)  [ 50%] 2 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                   -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM            -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                      -
executor >  local (14)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)             [100%] 4 of 4 ✔
[c6/2623ce] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1)                            [  0%] 0 of 4
[0e/48f1a1] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_2a) [ 75%] 3 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                   -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM            -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                      -
executor >  local (17)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                         [100%] 4 of 4 ✔
[c6/2623ce] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1)                                        [  0%] 0 of 4
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)              [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard) [  0%] 0 of 1
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE                   -
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                    [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                               -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM                        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                  -
executor >  local (17)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                         [100%] 4 of 4 ✔
[c6/2623ce] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1)                                        [  0%] 0 of 4
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)              [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard) [  0%] 0 of 1
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE                   -
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                    [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                               -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM                        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                  -
executor >  local (17)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                         [100%] 4 of 4 ✔
[d1/3d84ba] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2a)                                       [ 25%] 1 of 4
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)              [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard) [  0%] 0 of 1
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE                   -
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                    [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                               -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM                        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                  -
executor >  local (17)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                         [100%] 4 of 4 ✔
[c6/2623ce] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1)                                        [ 50%] 2 of 4
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)              [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard) [  0%] 0 of 1
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE                   -
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                    [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                               -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM                        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                  -
executor >  local (17)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                         [100%] 4 of 4 ✔
[6e/ce48a6] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_1a)                                       [ 75%] 3 of 4
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)              [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard) [  0%] 0 of 1
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE                   -
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                    [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                               -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM                        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                  -
executor >  local (17)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                         [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                        [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)              [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard) [  0%] 0 of 1
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE                   -
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                    [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                               -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM                        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                         -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                  -
executor >  local (18)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [  0%] 0 of 1
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                                             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM                                      -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                                       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                                -
executor >  local (18)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN                                             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM                                      -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                                       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                                -
executor >  local (19)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[e7/b3e881] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (RV)                                  [ 50%] 1 of 2
[66/0b6b6b] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (RV)                                        [  0%] 0 of 1
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM                                      -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                                       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                                -
executor >  local (20)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [  0%] 0 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM                                      -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                                       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                                -
executor >  local (20)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[66/0b6b6b] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (RV)                                        [ 50%] 1 of 2
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM                                      -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                                       -
executor >  local (24)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
[f6/4f96c1] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_2a)                        [  0%] 0 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                                       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                                -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_DENOISING                                                          -
executor >  local (24)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
[f6/4f96c1] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_2a)                        [ 25%] 1 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                                       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                                -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_DENOISING                                                          -
executor >  local (24)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
[cd/9fae7e] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_1)                         [ 50%] 2 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                                       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR                                                                -
executor >  local (24)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
[c9/7c2eea] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_1a)                        [ 75%] 3 of 4
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2                                       -
executor >  local (27)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
[c0/cbcace] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_2)                         [100%] 4 of 4 ✔
[58/d14188] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2 (FW)                                  [  0%] 0 of 2
executor >  local (27)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
[c0/cbcace] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_2)                         [100%] 4 of 4 ✔
[58/d14188] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2 (FW)                                  [  0%] 0 of 2
executor >  local (27)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔[c0/cbcace] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_2)                         [100%] 4 of 4 ✔
executor >  local (27)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
[c0/cbcace] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_2)                         [100%] 4 of 4 ✔
executor >  local (28)[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (29)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (30)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (30)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (31)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (31)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (36)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (36)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (36)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (36)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (36)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (36)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (37)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
executor >  local (37)
[db/257d04] process > NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1)                                       [100%] 4 of 4 ✔
[23/5949b2] process > NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (sampleID_2)                                                      [100%] 4 of 4 ✔
[1b/a7166a] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1)                            [100%] 4 of 4 ✔
[ba/d8d09e] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard)               [100%] 1 of 1 ✔
[1f/364346] process > NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) [100%] 1 of 1 ✔
[67/aaa3c8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW)                                  [100%] 2 of 2 ✔
[7c/867482] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW)                                        [100%] 2 of 2 ✔
[c0/cbcace] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_2)                         [100%] 4 of 4 ✔
[58/d14188] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2 (FW)                                  [100%] 2 of 2 ✔
[de/560066] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR (1)                                                            [100%] 1 of 1 ✔
[47/2fac0b] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_DENOISING (1)                                                      [100%] 1 of 1 ✔
[0e/332dde] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_RMCHIMERA (1)                                                      [100%] 1 of 1 ✔
[8b/43e32d] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_STATS (1)                                                          [100%] 1 of 1 ✔
[39/5b12a8] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_MERGE                                                              [100%] 1 of 1 ✔
[6f/01d879] process > NFCORE_AMPLISEQ:AMPLISEQ:MERGE_STATS_STD (1)                                                      [100%] 1 of 1 ✔
[05/0cc2dc] process > NFCORE_AMPLISEQ:AMPLISEQ:BARRNAP (ASV_seqs.fasta)                                                 [100%] 1 of 1 ✔
[f7/64a097] process > NFCORE_AMPLISEQ:AMPLISEQ:BARRNAPSUMMARY                                                           [100%] 1 of 1 ✔
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:FORMAT_TAXONOMY                                                          -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_TAXONOMY                                                           -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ADDSPECIES                                                         -
[08/dcbeff] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_TAXONOMY:QIIME2_INSEQ (ASV_seqs.fasta)                            [100%] 1 of 1 ✔
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_TAXONOMY:QIIME2_CLASSIFY                                          -
[70/5c5be6] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_INASV (ASV_table.tsv)                                             [100%] 1 of 1 ✔
[27/e1d37d] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_INSEQ (ASV_seqs.fasta)                                            [100%] 1 of 1 ✔
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_INTAX                                                             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_FILTERTAXA                                                        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:FILTER_STATS                                                             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:MERGE_STATS_FILTERTAXA                                                   -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_EXPORT:QIIME2_EXPORT_ABSOLUTE                                     -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_EXPORT:QIIME2_EXPORT_RELASV                                       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_EXPORT:QIIME2_EXPORT_RELTAX                                       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_EXPORT:COMBINE_TABLE_QIIME2                                       -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_EXPORT:COMBINE_TABLE_DADA2                                        -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_BARPLOT                                                           -
[ea/ae64df] process > NFCORE_AMPLISEQ:AMPLISEQ:METADATA_ALL (Metadata.tsv)                                              [100%] 1 of 1 ✔
[7e/858721] process > NFCORE_AMPLISEQ:AMPLISEQ:METADATA_PAIRWISE (Metadata.tsv)                                         [100%] 1 of 1 ✔
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_DIVERSITY:QIIME2_TREE                                             -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_DIVERSITY:QIIME2_ALPHARAREFACTION                                 -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_DIVERSITY:QIIME2_DIVERSITY_CORE                                   -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_DIVERSITY:QIIME2_DIVERSITY_ALPHA                                  -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_DIVERSITY:QIIME2_DIVERSITY_BETA                                   -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_DIVERSITY:QIIME2_DIVERSITY_BETAORD                                -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_ANCOM:QIIME2_FILTERSAMPLES_ANCOM                                  -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_ANCOM:QIIME2_ANCOM_TAX                                            -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_ANCOM:QIIME2_ANCOM_ASV                                            -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:CUSTOM_DUMPSOFTWAREVERSIONS                                              -
[-        ] process > NFCORE_AMPLISEQ:AMPLISEQ:MULTIQC                                                                  -

Relevant files

No response

System information

No response

erikrikarddaniel commented 1 year ago

I have no idea, except that it's likely something local. This works for me and many others. On what type of hardware do you run, your own machine, HPC, cloud? (This is actually a question that is easier to discuss at nf-core's Slack (https://nf-co.re/join) than here.)

freemutation commented 1 year ago

Thanks! I run the pipeline on the HPC. I would try to discuss the issue at nf-core's Slack.

d4straub commented 1 year ago

Did you find and fix the problem? If yes, how? Can we close this issue?

freemutation commented 1 year ago

Thank you very much, the problem has been resolved！Try a few more times, the pipeline can run normally！