Closed d4straub closed 1 year ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 2c2ea1e
+| ✅ 152 tests passed |+
#| ❔ 3 tests were ignored |#
!| ❗ 2 tests had warnings |!
Fine to have three input params, I think. Actually clearer in many ways compared to the implicit handling of today.
Thanks for the review & advice!
nf-core template v2.9 came with nf-validation that can be also applied to validate samplesheets.
However, nf-validation cannot handle multiple input kinds, such as we have for
--input
(samplesheet, ASV/OTU fasta, folder input). Only with separate input params, nf-validation can be used for the sample sheet. Therefore I split--input
into--input
(samplesheet),--input_fasta
(ASV/OTU fasta), and--input_folder
(folder input).PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).