Closed d4straub closed 11 months ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 3278e5b
+| ✅ 153 tests passed |+
#| ❔ 3 tests were ignored |#
!| ❗ 3 tests had warnings |!
Hm tests are failing because
ERROR ~ No such file or directory: https://zenodo.org/record/4310151/files/rdp_train_set_18.fa.gz
(which is obviously not true, probably connectivity issues)
it seems that I will eventually need to change that particular files because its not the first time they are problematic.
Will re-start the tests later and it will succeed.
This is for release 2.7.0.
Most notable changes:
--input
into 3 parameters,--input
now points to a sampleheet, alternatives are--input_fasta
&--input_folder
to accommodate nf-validation'sfromSamplesheet
More details in the CHANGELOG
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).