Add custom qiime reference database support to Ampliseq.

nf-core / ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

https://nf-co.re/ampliseq

MIT License

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Closed MatthewJM96 closed 9 months ago

MatthewJM96 commented 10 months ago

Implement an equivalent custom database flag as exists for Kraken and Dada (i.e. qiime_ref_tax_custom).

d4straub commented 10 months ago

A custom trained classifier can be already supplied with --classifier, but there is indeed no option equivalent to --dada_ref_tax_custom.

d4straub commented 9 months ago