Closed d4straub closed 3 months ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 4707d38
+| ✅ 190 tests passed |+
#| ❔ 6 tests were ignored |#
!| ❗ 2 tests had warnings |!
Unfortunately the AWS full test run failed, will re-try and then troubleshoot. edit: ok the run now succeeded, so seems fine after all.
This is release 2.9.0.
Potential problem: For a new software I produced a container and deposited it at dockerhub. The processes that use that software are doing so with
container 'docker.io/d4straub/pipesidle:0.1.0-beta'
. My proposal to put the tool (pypi packaged) to conda was rejected by the developer of said tool. I generated the container with Dockerfile & environment.yml. Maybe there is a better solution to that?Changes are:
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).