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nf-core / bacass

Simple bacterial assembly and annotation pipeline
https://nf-co.re/bacass
MIT License
63 stars 42 forks source link

Chack whether `--assembly_type` parameter is requiered in nextflow run and update `README.md` #144

Open Daniel-VM opened 5 months ago

Daniel-VM commented 5 months ago

Description of the bug

The pipeline usage documentation might need to be updated because there seems to be an issue in the nextflow run command when the --assembly_type parameter is absent.

nextflow run nf-core/bacass \
  -profile <docker/singularity/.../institute> \
  --input samplesheet.tsv \
  --outdir <OUTDIR>

The issue aim is to check that the --assembly_type parameter is indeed required to run nf-core/bacass.

Command used and terminal output

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Relevant files

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System information

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