Closed Daniel-VM closed 4 days ago
nf-core lint
nextflow run . -profile test,docker --outdir <OUTDIR>
docs/usage.md
docs/output.md
CHANGELOG.md
README.md
This PR fixes a wrong channel input for MINIMAP_ALIGN module (#165 )
The logic for long read polishing has been updated as follows:
assembly_type
long
(Closes #165 )
Posted for pipeline commit 0917bda
+| ✅ 198 tests passed |+ #| ❔ 2 tests were ignored |#
Thanks @charles-plessy :)
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).PR Description
This PR fixes a wrong channel input for MINIMAP_ALIGN module (#165 )
The logic for long read polishing has been updated as follows:
assembly_type
==long
(hybrid mode uses different tools and a separate polishing strategy).(Closes #165 )