Many thanks to contributing to qbic-pipelines/bamtofastq!
Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).
As discussed, we ar enow using the fromFilePairs channel function to ensure correct pairing of both bam and bai. Additionally, this PR add the index to all processes which are dividing the input bam into chunks.
PR checklist
[x] This comment contains a description of changes (with reason)
[x] If you've fixed a bug or added code that should be tested, add tests!
[ ] If necessary, add test data to testdata/
[ ] Ensure the test suite passes (nextflow run . -profile test,docker).
Many thanks to contributing to qbic-pipelines/bamtofastq!
Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).
As discussed, we ar enow using the
fromFilePairschannel function to ensure correct pairing of both bam and bai. Additionally, this PR add the index to all processes which are dividing the input bam into chunks.PR checklist
testdata/nextflow run . -profile test,docker).nf-core lint .).docsis updatedCHANGELOG.mdis updatedREADME.mdis updatedLearn more about contributing: https://github.com/qbic-pipelines/bamtofastq/tree/master/.github/CONTRIBUTING.md