Porting to DSL2 - Githubissues

nf-core / bamtofastq

Converts bam or cram files to fastq format and does quality control.

https://nf-co.re/bamtofastq

MIT License

21 stars 13 forks source link

Porting to DSL2 #42

Closed ggabernet closed 1 year ago

ggabernet commented 1 year ago

Many thanks to contributing to qbic-pipelines/bamtofastq!

Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).

PR checklist

[ ] This comment contains a description of changes (with reason)
[ ] If you've fixed a bug or added code that should be tested, add tests!
[ ] If necessary, add test data to testdata/
[ ] Ensure the test suite passes (nextflow run . -profile test,docker).
[ ] Make sure your code lints (nf-core lint .).
[ ] Documentation in docs is updated
[ ] CHANGELOG.md is updated
[ ] README.md is updated

Learn more about contributing: https://github.com/qbic-pipelines/bamtofastq/tree/master/.github/CONTRIBUTING.md

ggabernet commented 1 year ago

we thought we will try again to include it into nf-core, now that with the template update it was easy to brand it again as nf-core 😊

FriederikeHanssen commented 1 year ago

after discussion with @SusiJo we close this PR, it is superseded by #43