Closed asp8200 closed 6 months ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 8d238d5
+| ✅ 170 tests passed |+
#| ❔ 1 tests were ignored |#
!| ❗ 3 tests had warnings |!
Thanks for merging. What about the changelog?
Update samtools to v1.19.2.
Had to do some search-replace of
fasta
tofasta.map{ it -> [[:], it] }
in calls to samtools-models. There might be a more elegant solution though.Detail: I got this warning:
WARN: Undocumented setting "docker.userEmulation" is not supported any more - please remove it from your config
so I removeddocker.userEmulation
fromnextflow.config
.TO-DO: Update CHANGELOG.