Closed asp8200 closed 5 months ago
nf-core lint
overall result: Failed :x:Posted for pipeline commit 254d231
+| ✅ 165 tests passed |+
#| ❔ 1 tests were ignored |#
!| ❗ 7 tests had warnings |!
-| ❌ 3 tests failed |-
Version 2.13.1
of the nf-core/tools pipeline template has just been released. This pull-request is now outdated and has been closed in favour of https://github.com/nf-core/bamtofastq/pull/80
Please use https://github.com/nf-core/bamtofastq/pull/80 to merge in the new changes from the nf-core template as soon as possible.
@maxulysse : How about those questions concerning params.fasta
and params.fasta_fai
in the description of the PR?
My attempt at merging dev into template and back again into dev - hopefully resolving conflicts.
Both profile=test and profile=test_full are passing.
Not sure the way the
params.fasta
andparams.fasta_fai
are handled is completely correct.Also, when I run the pipeline in test-mode, I get
All CI-tests (except linting) are passing 🥳 Thanks, @maxulysse 🫶