Add alignment warnings for bowtie

nf-core / cageseq

CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.

https://nf-co.re/cageseq

MIT License

11 stars 12 forks source link

Closed KevinMenden closed 3 years ago

KevinMenden commented 4 years ago

Currently warnings for failed or low-percentage alignments are only implemented for the star alignment process.

Would be nice if we can implement this for bowtie as well.