Samplesheet description in the documentation

[IStevant]

Description of the bug

Dear developers,

I noticed the example of samplesheet is not correct, especially the control column. The sample column contains the name of the samples plus the replicate number, while in the control column the sample name do not contain the replicate number information.

I was trying to adapt the example with my samples and I had the following error message:

sample,fastq_1,fastq_2,antibody,control
E11_5_IP_REP1,NWJS1.R1.fastq.gz,NWJS1.R2.fastq.gz,myc,Input
E11_5_IP_REP2,NWJS2.R1.fastq.gz,NWJS2.R2.fastq.gz,myc,Input
E11_5_contr_IP_REP1,NWJS3.R1.fastq.gz,NWJS3.R2.fastq.gz,myc,Input
E11_5_contr_IP_REP2,NWJS4.R1.fastq.gz,NWJS4.R2.fastq.gz,myc,Input
Input_REP1,NWJS13.R1.fastq.gz,NWJS13.R2.fastq.gz,,
Input_REP2,NWJS14.R1.fastq.gz,NWJS14.R2.fastq.gz,,

Command wrapper:
  ERROR: Please check samplesheet -> Control identifier has to match does a provided sample identifier!
  Control: 'Input'

I had to add the '_REP1 or 2' to make the pipeline run.

Could you correct the examples in the documentation?

Best,

I.

Command used and terminal output

No response

Relevant files

No response

System information

No response

[sanjeevRJMU1]

@IStevant thank you so much for pointing out this issue and your fix. I ran into the same issue (so frustrating!) and was able to resolve this by adding the "REPn" nomenclature to the inputs as you mentioned. :)

[KrebsLab]

I'm also facing the same issue. Splitting the sample column to sample and replicate would be neat

[JoseEspinosa]

I'm also facing the same issue. Splitting the sample column to sample and replicate would be neat

Thanks for the comments. This is already implemented in #349 and should be shortly released