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nf-core / chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.
https://nf-co.re/chipseq
MIT License
188 stars 145 forks source link

Make subworkflows & modules available for nf-core tools #362

Closed kelly-sovacool closed 11 months ago

kelly-sovacool commented 1 year ago

Description of the bug

I was hoping to reuse some of the local subworkflows and modules defined in this repo and install them via the nf-core tools CLI, but the nf-core modules and nf-core subworkflows commands fail because of missing information in .nf-core.yml.

Command used and terminal output

nf-core subworkflows --git-remote https://github.com/nf-core/chipseq.git list remote

CRITICAL 'org_path' key not present in .nf-core.yml

nf-core modules --git-remote https://github.com/nf-core/chipseq.git list remote

CRITICAL 'org_path' key not present in .nf-core.yml

Relevant files

No response

System information

nf-core, version 2.9

JoseEspinosa commented 11 months ago

Hi, sorry for the late response. The idea of nf-core modules and nf-core subworkflows +--git-remote is not to install local modules or subworflows from pipelines. Instead, is for maintaining your own github repository of modules and/or subworkflows and being able to install them.