Fixes the publishDir paths for ../merged_library/ and ../broad_peak/ or ../narrow_peak/. Currently, the pipeline was creating three different directories for each peak type.
PR checklist
[x] This comment contains a description of changes (with reason).
[x] Make sure your code lints (nf-core lint).
[x] Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
[x] Output Documentation in docs/output.md is updated.
[ ] CHANGELOG.md is updated.
[ ] README.md is updated (including new tool citations and authors/contributors).
This PR:
Fixes the publishDir paths for
../merged_library/
and../broad_peak/
or../narrow_peak/
. Currently, the pipeline was creating three different directories for each peak type.PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).