Closed DSchreyer closed 2 years ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 0245499
+| ✅ 146 tests passed |+
!| ❗ 11 tests had warnings |!
Why do the CI with conda instead of docker?
One of the main packages (AmpliconArchitect and its additional softwares) is not on bioconda, yet, and I couldn’t get a mulled container of the dependencies into biocontainers. To test the full pipeline it needs to run with conda. 4 out of the 5 pipeline branches can be run with docker, but sadly not all.
I got in contact with the authors of AmpliconArchitect, but they said it could take some time to put it on bioconda. I thought about doing it myself, but I don’t even know where to start and therefore I put this on hold until bioconda is clearer to me.
Thanks for the explanation
PR checklist
nf-core lint
).nextflow run . -profile test,docker
--outdirdocs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).