Closed DSchreyer closed 2 years ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 65b9b5e
+| ✅ 142 tests passed |+
#| ❔ 3 tests were ignored |#
!| ❗ 2 tests had warnings |!
Thanks for taking the time to review the pipeline! Your comments are much appreciated :)
About the modules: I am aware that some modules are included in local and don't use the official nf-core modules
About the BAM_STATS_SAMTOOLS warning:
I am happy that you did not run into any problems running it with the test data sets and using all relevant software containers/repositories.
Thanks a lot for doing that @sguizard !
Will close this as the Pseudo PR points have been adressed - PR to dev is running now
PSEUDO PR - DO NOT MERGE
This is the pseudo-PR that we use for the community review leading up to the first release of this nf-core pipeline.
Please do not merge the PR, as that closes it and all associated discussion. However, you can use the GitHub reviewing interface to add reviews and inline comments to the code.
To do before first release
Update Markdown
All Markdown files containing information about the pipeline need to be updated including output.md, usage.md and README.md.