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nf-core / circdna

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
https://nf-co.re/circdna
MIT License
25 stars 14 forks source link

Important! Template update for nf-core/tools v2.5 #32

Closed nf-core-bot closed 1 year ago

nf-core-bot commented 1 year ago

Version 2.5 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.5 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/developers/sync.

For more information about this release of nf-core/tools, please see the v2.5 release page.

github-actions[bot] commented 1 year ago

Python linting (black) is failing

To keep the code consistent with lots of contributors, we run automated code consistency checks. To fix this CI test, please run:

Once you push these changes the test should pass, and you can hide this comment :+1:

We highly recommend setting up Black in your code editor so that this formatting is done automatically on save. Ask about it on Slack for help!

Thanks again for your contribution!

nf-core-bot commented 1 year ago

Version 2.5.1 of the nf-core/tools pipeline template has just been released. This pull-request is now outdated and has been closed in favour of https://github.com/nf-core/circdna/pull/33

Please use https://github.com/nf-core/circdna/pull/33 to merge in the new changes from the nf-core template as soon as possible.