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nf-core / circrna

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
https://nf-co.re/circrna
MIT License
44 stars 24 forks source link

Test profiles failures #171

Open scoughlan2 opened 2 months ago

scoughlan2 commented 2 months ago

Description of the bug

I tried to run the test profile with nextflow run nf-core/circrna -profile test,docker --outdir ./test but get the error below. As both the test and test_full profiles use the same samples, I'm guessing this is because only circexplorer2 is run in the minimal test compared with the multiple bsj detection tools that are specified in conf/full.conf .

Error: Submitted process > NFCORE_CIRCRNA:CIRCRNA:BSJ_DETECTION:FAIL_ON_EMPTY (empty) ERROR ~ No circular RNAs were found by any tool in any sample. Feel free to check the preliminary results in 'test' You can enable saving intermediate files by setting the parameter 'save_intermediates' to 'true'.

Command used and terminal output

nextflow run nf-core/circrna -profile test,docker --outdir ./test

Relevant files

No response

System information

scoughlan2 commented 2 months ago

I also just tested with nextflow run nf-core/circrna -profile test_full,docker --outdir ./test_full and get a similar error so my previous assumption about the cause was wrong.

Submitted process > NFCORE_CIRCRNA:CIRCRNA:BSJ_DETECTION:FAIL_ON_EMPTY (empty)
ERROR ~ No circular RNAs were found by at least 2 tools in any sample.
Feel free to check the preliminary results in 'test_full'