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nf-core
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createpanelrefs
Generate Panel of Normals, models or other similar references from lots of samples
https://nf-co.re/createpanelrefs
MIT License
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GermlineCNVCaller resource consumption
#32
HudoGriz
opened
3 days ago
0
publish gens intervals by default
#31
jemten
closed
3 months ago
0
update modules
#30
ramprasadn
closed
3 months ago
1
xpose these params from GATK4_CREATEREADCOUNTPANELOFNORMALS
#29
maxulysse
closed
3 months ago
0
updates the default args for gens
#28
jemten
closed
3 months ago
0
Include gatk4/postprocessgermlinecnvcalls
#27
Jorisvansteenbrugge
closed
2 days ago
6
Important! Template update for nf-core/tools v2.14.1
#26
nf-core-bot
closed
4 months ago
0
Important! Template update for nf-core/tools v2.14.0
#25
nf-core-bot
closed
4 months ago
1
Refactor + updates to gens and germlinecnvcaller
#24
ramprasadn
closed
5 months ago
0
Add igenomes support
#23
maxulysse
closed
5 months ago
1
Template update v2.13.1
#22
ramprasadn
closed
6 months ago
0
Important! Template update for nf-core/tools v2.13.1
#21
nf-core-bot
closed
6 months ago
0
Template updates v2.13
#20
ramprasadn
closed
7 months ago
2
update Germlinecnvcaller subworkflow
#19
ramprasadn
closed
6 months ago
0
Important! Template update for nf-core/tools v2.13
#18
nf-core-bot
closed
7 months ago
0
PON for gens
#17
ramprasadn
closed
6 months ago
0
Important! Template update for nf-core/tools v2.12
#16
nf-core-bot
closed
7 months ago
2
pipeline does not generate cnv models
#15
egenomics
opened
8 months ago
1
Important! Template update for nf-core/tools v2.11.1
#14
maxulysse
closed
8 months ago
3
Add optional targets argument to CNVkit
#13
lescai
closed
8 months ago
0
Important! Template update for nf-core/tools v2.11
#12
nf-core-bot
closed
8 months ago
1
Important! Template update for nf-core/tools v2.10
#11
nf-core-bot
closed
9 months ago
1
Add germlinecnvcaller
#10
ramprasadn
closed
1 year ago
1
Update CNVkit/batch
#9
ramprasadn
closed
1 year ago
0
Adding PON with Mutect2
#8
maxulysse
closed
6 months ago
1
Add dbnsfp computation and files
#7
FriederikeHanssen
opened
1 year ago
0
Convert files for CNVKIT
#6
maxulysse
opened
1 year ago
0
FEAT: add CNVKIT + base skeleton
#5
maxulysse
closed
1 year ago
0
panel of normals creation for Mutect2
#4
maxulysse
closed
6 months ago
1
panel of normals creation for cnvkit
#3
marrip
closed
1 year ago
0
Create ploidy and cnv models for GATK's germline cnv calling pipeline
#2
ramprasadn
closed
6 months ago
1
qDNAseq bin annotations
#1
matthdsm
opened
1 year ago
1