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nf-core / createtaxdb

Parallelised and automated construction of metagenomic classifier databases of different tools
https://nf-co.re/createtaxdb
MIT License
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MALT will fail if too many FASTAs due to UNIX command limits #29

Open jfy133 opened 4 months ago

jfy133 commented 4 months ago

Description of the bug

See here: https://nfcore.slack.com/archives/C062H82UCRG/p1710513463929289?thread_ts=1709737644.063319&cid=C062H82UCRG

I think we can just supply the entire work directory to the command with ./ or stage them into a directory

Command used and terminal output

No response

Relevant files

No response

System information

No response

Midnighter commented 4 months ago

Alternatively, does Malt accept as input a file listing all the FASTA?

jfy133 commented 4 months ago

Sadly not

jfy133 commented 2 months ago

Should probably update ALL modules to do this if they support it...