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nf-core / createtaxdb

Parallelised and automated construction of metagenomic classifier databases of different tools
https://nf-co.re/createtaxdb
MIT License
3 stars 3 forks source link

Add support for metacache db #39

Open ChillarAnand opened 3 days ago

ChillarAnand commented 3 days ago

Description of feature

https://github.com/muellan/metacache

Similar to Kraken2, metacache also needs to build a database. Is it possible to add pipeline for this as well?

jfy133 commented 3 days ago

It looks pretty straight forward to me (and have come across the tool before!) so happy to do so eventually.

However for the time being I am mirroring database builds for tools that go into into nf-core/taxprofiler , once they are in, I would look into additional tools for here.

If you make an issue to add metacache to nf-core/taxprofiler, it would bump this up the priority list :)

ChillarAnand commented 3 days ago

@jfy133 Thanks for quick reply.

Raised a feature request on https://github.com/nf-core/taxprofiler/issues/506