Open LaurenceKuhl opened 1 month ago
What is the content of user.config
?
What is happening here is that files have to be staged to the process work directory, so they have to be provided as module inputs. By providing this file through a config it is not staged, so it is not found when running the module.
Description of the bug
When the user adds a cnv correction with the config file, the pipeline takes ages and then fails count_table.count.txt Brunello_RepA_Dropout_A375_Brunello_RepB_Dropout_A375_vs_Brunello_pDNA.txt
Command used and terminal output
Relevant files
No response
System information
No response