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nf-core / cutandrun

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
https://nf-co.re/cutandrun
MIT License
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Is the default binsize really 1 when using `CPM` normalization? #256

Open nvictus opened 2 months ago

nvictus commented 2 months ago

Description of the bug

Possible discrepancy with what the docs say in the table and the code, where the default value appears to be 50:

https://github.com/nf-core/cutandrun/blob/6e1125d4fee4ea7c8b70ed836bb0e92a89e3305f/nextflow.config#L66

Command used and terminal output

No response

Relevant files

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System information

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chris-cheshire commented 2 months ago

Thanks for the catch, i seem to have forgotten to update