[enhancement] do .yaml config parsing and puting into channels in groovy instead of python

nf-core / deepmodeloptim

Stochastic Testing and Input Manipulation for Unbiased Learning Systems

https://nf-co.re/deepmodeloptim

MIT License

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[enhancement] do .yaml config parsing and puting into channels in groovy instead of python #205

Open mathysgrapotte opened 4 weeks ago

mathysgrapotte commented 4 weeks ago

Description of feature

currently .yaml config parsing/splitting into multiple yamls happens in a python process, we would like this to happen in groovy for multiple reasons :

python programs do not use .yaml files, this is specific to the nextflow pipeline
would not require stimlus-py container to split .yaml files
more in line with nf-core/nextflow philosophy