issues
search
nf-core
/
deepmodeloptim
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
https://nf-co.re/deepmodeloptim
MIT License
23
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Implements stub and debug profiles
#109
JoseEspinosa
closed
6 months ago
3
[Titanic] added launch_check_training to see if the model can check an epoch
#108
mathysgrapotte
closed
6 months ago
1
[feat] How changes in the input contribute changes of the model
#107
suzannejin
closed
1 month ago
1
[feat] convolution -> which filters are activated for which sequences
#106
suzannejin
closed
1 month ago
1
[feat] how do model parameters affect model performance
#105
suzannejin
closed
1 month ago
1
[feat] how do data variation affect model performance?
#104
suzannejin
closed
1 month ago
1
[fea] motif discovery - analysis block
#103
suzannejin
closed
1 month ago
1
[feat] dna sequence analysis block
#102
suzannejin
closed
1 month ago
1
[feat] report robustness metric for the models
#101
suzannejin
closed
6 months ago
0
[feat] report to show if the model is learning
#100
suzannejin
closed
6 months ago
0
Improve parsing of initial CSV file and impose data types as defined in meta
#99
luisas
closed
6 months ago
0
Add stub-run
#98
JoseEspinosa
closed
6 months ago
0
Move local modules to /modules/local
#97
JoseEspinosa
closed
6 months ago
0
Augmentation revcomplement python
#96
luisas
closed
6 months ago
0
Adopt the nf-core template before migration
#95
JoseEspinosa
closed
1 month ago
1
[feat] save the models during tuning
#94
suzannejin
closed
6 months ago
1
[bug] RayTune Learner is using the validation set to train, remove the if case statement
#93
mathysgrapotte
closed
6 months ago
1
added test config and updated with correct exp_conf the nextflow_schema
#92
alessiovignoli
closed
7 months ago
0
[feat] use safetensors to save and load model weights
#91
suzannejin
closed
1 month ago
5
added python ps package to images
#90
alessiovignoli
closed
7 months ago
0
use wave to build and deploy containers
#89
alessiovignoli
closed
1 month ago
1
[improvement] change step -> epoch in model definition, as step is reserved for the Trainable class in RayTune
#88
mathysgrapotte
closed
6 months ago
1
[feat] save model and files during tuning
#87
suzannejin
closed
7 months ago
0
Update nextflow_schema.json
#86
evanfloden
closed
7 months ago
0
The pipeline runs x times splitting based on the number of combinations of json
#85
suzannejin
closed
6 months ago
0
downsampling block in stimulus
#84
alessiovignoli
closed
1 month ago
2
One stimulus container
#83
alessiovignoli
closed
7 months ago
0
updated the crg resources and label inside the nextflow modules
#82
suzannejin
closed
7 months ago
0
[feat] check if model runs before launching full workflow
#81
mathysgrapotte
closed
6 months ago
1
Schema for Sequera cloud
#80
alessiovignoli
closed
7 months ago
0
[feature] store data
#79
suzannejin
closed
1 month ago
0
Test on IBIS challenge data
#78
suzannejin
closed
2 months ago
0
[good to have] shuffle prior to splitting
#77
mathysgrapotte
closed
6 months ago
1
[feat] allow for taking encoded data as input
#76
mathysgrapotte
closed
1 month ago
2
[feat] data augmentation
#75
mathysgrapotte
closed
6 months ago
2
Shuffling module
#74
alessiovignoli
closed
7 months ago
0
[test] do a minimal test for Titanic Kaggle dataset
#73
mathysgrapotte
closed
6 months ago
1
Train module
#72
alessiovignoli
closed
7 months ago
0
Create image fro training
#71
alessiovignoli
closed
7 months ago
0
[feat] add shuffling to CsvProcessing
#70
mathysgrapotte
closed
7 months ago
0
stimulus to chose the arquitecture and finish the training of the best one(s) chosen by user
#69
suzannejin
closed
2 months ago
1
Remove stuff in workDir when complete
#68
suzannejin
closed
2 months ago
1
Adding shuffling block
#67
suzannejin
closed
7 months ago
2
Data augmentation block
#66
suzannejin
closed
6 months ago
1
Pass model weights from ray tune to training for fine tuning
#65
luisas
closed
7 months ago
2
[future] how to pass a custom experiment file to the nextflow pipeline
#64
alessiovignoli
closed
1 month ago
4
Add data_type to meta too
#63
suzannejin
closed
6 months ago
1
[future] check correctness for the tune config
#62
alessiovignoli
closed
4 months ago
1
Learner luisa patch 1
#61
luisas
closed
7 months ago
0
Adapt (at least) some parts of the nf-core template
#60
JoseEspinosa
closed
1 month ago
1
Previous
Next