The nextflow version in the gitpod is too low for the demo workflow. I used the Gitpod environment as described in the nf-core/demo tutorial
nf-customize -> nextflow run nf-core/demo -profile test --outdir results
Nextflow 24.09.2-edge is available - Please consider updating your version to it
N E X T F L O W ~ version 24.02.0-edge
┃ Launching `https://github.com/nf-core/demo` [high_brenner] DSL2 - revision: 04060b4644 [master]
Downloading plugin nf-schema@2.1.1
Nextflow version 24.02.0-edge does not match workflow required version: >=24.04.2
I tried to update nextflow, but to no avail:
nf-customize -> nextflow self-update
N E X T F L O W
version 24.09.2-edge build 5927
created 14-10-2024 21:22 UTC
cite doi:10.1038/nbt.3820
http://nextflow.io
Nextflow installation completed. Please note:
- the executable file `nextflow` has been created in the folder: /opt/conda/bin
nf-customize -> nextflow info
Version: 24.02.0-edge build 5907
Created: 10-03-2024 19:56 UTC
System: Linux 6.1.91-060191-generic
Runtime: Groovy 4.0.19 on OpenJDK 64-Bit Server VM 17.0.13-internal+0-adhoc..src
Encoding: UTF-8 (UTF-8)
Is there another way to update nextflow on gitpod?
Command used and terminal output
nf-customize -> nextflow run nf-core/demo -profile test --outdir results
Nextflow 24.09.2-edge is available - Please consider updating your version to it
Downloading plugin nf-schema@2.1.1
Nextflow version 24.02.0-edge does not match workflow required version: >=24.04.2
nf-customize -> nextflow self-update
N E X T F L O W
version 24.09.2-edge build 5927
created 14-10-2024 21:22 UTC
cite doi:10.1038/nbt.3820
http://nextflow.io
Nextflow installation completed. Please note:
the executable file nextflow has been created in the folder: /opt/conda/bin
nf-customize -> nextflow info
Version: 24.02.0-edge build 5907
Created: 10-03-2024 19:56 UTC
System: Linux 6.1.91-060191-generic
Runtime: Groovy 4.0.19 on OpenJDK 64-Bit Server VM 17.0.13-internal+0-adhoc..src
Encoding: UTF-8 (UTF-8)
Description of the bug
Summary
The nextflow version in the gitpod is too low for the demo workflow. I used the Gitpod environment as described in the nf-core/demo tutorial
I tried to update nextflow, but to no avail:
Is there another way to update nextflow on gitpod?
Command used and terminal output
nf-customize -> nextflow run nf-core/demo -profile test --outdir results Nextflow 24.09.2-edge is available - Please consider updating your version to it
N E X T F L O W ~ version 24.02.0-edge
┃ Launching
https://github.com/nf-core/demo
[high_brenner] DSL2 - revision: 04060b4644 [master]Downloading plugin nf-schema@2.1.1 Nextflow version 24.02.0-edge does not match workflow required version: >=24.04.2 nf-customize -> nextflow self-update
Nextflow installation completed. Please note:
nextflow
has been created in the folder: /opt/conda/binnf-customize -> nextflow info Version: 24.02.0-edge build 5907 Created: 10-03-2024 19:56 UTC System: Linux 6.1.91-060191-generic Runtime: Groovy 4.0.19 on OpenJDK 64-Bit Server VM 17.0.13-internal+0-adhoc..src Encoding: UTF-8 (UTF-8)
Relevant files
No response
System information
I used the Gitpod environment as described in the nf-core/demo tutorial