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nf-core / demultiplex

Demultiplexing pipeline for sequencing data
https://nf-co.re/demultiplex
MIT License
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Falco result for single End FastQ cannot show in the MultiQC report #169

Closed wzheng0520 closed 9 months ago

wzheng0520 commented 9 months ago

Description of the bug

Looks like when we use the pipeline for single end samples, the multiQC report cannot have the result from FALCO (named as FASTQC section in multiQC report). I checked the code and find it might cause by multiqc_config.yml. It give is following code fastqc/data: fn: "*_fastqc_data.txt". However, for the single end fastq, the FALCO generated results end with _data.txt rather than _fastqc_data.txt .

Command used and terminal output

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Relevant files

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System information

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Aratz commented 8 months ago

@wzheng0520 I've fixed Falco's output in the modules repository, the update will be included in this pipeline soon. Meanwhile, you should be able to use it if you run nf-core module update locally.