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nf-core / demultiplex

Demultiplexing pipeline for sequencing data
https://nf-co.re/demultiplex
MIT License
41 stars 36 forks source link

Issue with AWS and NfcoreTemplate.groovy #171

Closed rulixxx closed 4 months ago

rulixxx commented 7 months ago

Description of the bug

Seems like the File methods in NfcoreTemplate.groovy don't like s3: locations. I had to change them to use Nextflow's file method. I think that nf-core would have fixed this already so probably just have to update this file to a more recent version to fix things.

Command used and terminal output

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Relevant files

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System information

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k1sauce commented 4 months ago

I assume this is fixed by #186 as well, since the latest template does not use NfcoreTemplate.groovy