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nf-core / demultiplex

Demultiplexing pipeline for sequencing data
https://nf-co.re/demultiplex
MIT License
41 stars 36 forks source link

Add Support for 10X Single Cell Demux #195

Closed apeltzer closed 1 month ago

apeltzer commented 2 months ago

Description of feature

The module for this exists already via cellranger mkfastq --> so should be a separate subworkflow that can handle 10X data.

nschcolnicov commented 1 month ago

-TODO: Push test-dataset branch to nf-core/test-datasets once its done testing: https://github.com/nf-core/test-datasets/pull/1264 Push modules branch to nf-core/modules once its done testing: https://github.com/nf-core/modules/pull/5984 Push demultiplex branch to nf-core/demultiplex once its done testing: https://github.com/nf-core/demultiplex/pull/202

nschcolnicov commented 1 month ago

Putting this one on hold until I fix the CI test https://github.com/nf-core/demultiplex/issues/211

nschcolnicov commented 1 month ago

All done