Closed atrigila closed 1 month ago
master
branch :x:base
to dev
Hi @atrigila,
It looks like this pull-request is has been made against the atrigila/demultiplex master
branch.
The master
branch on nf-core repositories should always contain code from the latest release.
Because of this, PRs to master
are only allowed if they come from the atrigila/demultiplex dev
branch.
You do not need to close this PR, you can change the target branch to dev
by clicking the "Edit" button at the top of this page.
Note that even after this, the test will continue to show as failing until you push a new commit.
Thanks again for your contribution!
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 0070b64
+| ✅ 187 tests passed |+
#| ❔ 3 tests were ignored |#
!| ❗ 7 tests had warnings |!
The new update from multiqc changes the way files are named (e.g. from multiqc_bcl2fastq_bylane.txt
to bcl2fastq_lane_counts.txt
). Therefore, the previous snapshots of bcl2fastq
and bclconvert
are failing. However, the multiqc report still generates those sections (e.g. clusters by lane or clusters by sample, or fastp module). For that reason, I am changing the filenames of the snapshots.
nf-core template is up-to-date. Modules and tests are updated in this PR.
198
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).