Closed nschcolnicov closed 1 month ago
PR is on hold until the s3 bucket that contains the new dataset has its access fixed: https://github.com/nf-core/ops/pull/64
This PR was created from the add_kraken branch and should be merged after https://github.com/nf-core/demultiplex/pull/220
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 9ce19f7
+| ✅ 190 tests passed |+
#| ❔ 3 tests were ignored |#
!| ❗ 6 tests had warnings |!
Test data should be available now!
s5cmd --no-sign-request ls s3://nf-core-test-datasets/demultiplex/
2024/08/05 18:29:52 946339840 SingleCell-RNA_P3_2_short.tar.gz
This PR addresses these two issues:
https://github.com/nf-core/demultiplex/issues/182 https://github.com/nf-core/demultiplex/issues/223
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).