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nf-core / demultiplex

Demultiplexing pipeline for sequencing data
https://nf-co.re/demultiplex
MIT License
44 stars 37 forks source link

Failing to run test profile #251

Closed nschcolnicov closed 2 months ago

nschcolnicov commented 2 months ago

I recently tried running the test profile using docker and singularity and they both fail for different reasons: Singularity command: nextflow run ../../main.nf -profile test,singularity --outdir results nextflow log: singularity.log

Docker command: nextflow run ../../main.nf -profile test,docker --outdir results -resume

nextflow log: docker.log

Run details: Branch: dev, commit: 374ec02e9f8767a0b2a02180b74724f40be43f03

More info: Test profile seems to be working in master.

Related issues: https://github.com/nf-core/smrnaseq/issues/367

FYI @atrigila @apeltzer @grst

atrigila commented 2 months ago

This issue was opened in demultiplex but is related to smrnaseq.

The solution is to add the profile illumina to the test.