Closed nschcolnicov closed 1 day ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit ad66840
+| ✅ 190 tests passed |+
#| ❔ 3 tests were ignored |#
!| ❗ 7 tests had warnings |!
@apeltzer There seems to be an issue with the new module from MultiQC, when using the latest containers kraken report does not get added to it. Already reported the issue in MultiQC: https://github.com/MultiQC/MultiQC/issues/2801
sgdemux and fqtk now sometimes generate an additional task, possibly retrying a failed execution, not sure because I haven't been able to reproduce when running locally
MQC 1.25 (see PR https://github.com/nf-core/modules/pull/6655#event-14291850822) should fix this
Merging this into a branch on nf-core already 👍🏻
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).