This PR allows users to choose all genes for the explanatory analysis (by setting the param to -1), as done in the attached example. As this caused problems with a previous version (the --exploratory_n_features param is defined as int, but old nextflow validations interpret -1 as string), I also had to bump the nextflow min version.
This PR allows users to choose all genes for the explanatory analysis (by setting the param to -1), as done in the attached example. As this caused problems with a previous version (the
--exploratory_n_features
param is defined as int, but old nextflow validations interpret -1 as string), I also had to bump the nextflow min version.SRP254919_allgenes.html.zip
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).