Closed pinin4fjords closed 1 month ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 9c1a6cf
+| ✅ 268 tests passed |+
#| ❔ 4 tests were ignored |#
!| ❗ 5 tests had warnings |!
Thanks @WackerO !
In this PR:
Move
features_log2_assays
toexploratory_log2_assays
(it's not a setting relevant to feature annotation)Specify assays to log where sensible, rather than guessing. For RNA-seq the raw and normalised matrices are unlogged when input to exploratory analysis, so should be sent for logging.
[x] update shinyngs module to allow readable text specification of matrices to log.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).