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nf-core / differentialabundance

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
https://nf-co.re/differentialabundance
MIT License
57 stars 33 forks source link

Implement nf-test #61

Open WackerO opened 1 year ago

WackerO commented 1 year ago

Description of feature

I'm going to switch the github ci to pytest-workflow so that github can monitor the consistency of pipeline output instead of just checking that PRs don't make the pipeline fail

apeltzer commented 1 year ago

Rather go for nf-test please, not pytest anymore.

WackerO commented 1 year ago

I will move this back a bit until the hackathon, maybe nf-test can be discussed then (if this is the recommended nf-core/nextflow testing tool, it would be great to also have a bit more documentation, e.g. how to best test multiple profiles of a pipeline)