Closed clstacy closed 1 year ago
Thanks for reporting, will probably just need check.names = FALSE
somewhere, I'll fix soon.
I believe https://github.com/nf-core/differentialabundance/pull/60 will fix this for the specific module. It may also come up in later modules though, so more testing will be required.
I believe this should be addressed by recent PRs. Please reopen if you encounter similar issues with the current dev version.
Description of the bug
Pipeline failing with input and matrix sample names including "-" character on CUSTOM_MATRIXFILTER step, error gives all names of samples with "-" ID. When I check the work folder for the process, the names in each of the files have had "-" changed to ".", but I think this might be being compared to the original names and failing?
If I change names with sed in input and matrix file to remove "-", the pipeline continues without error.
Command used and terminal output
Relevant files
command_files.tgz
System information