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nf-core / dualrnaseq

Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
https://nf-co.re/dualrnaseq
MIT License
18 stars 30 forks source link

Are there plans to port the workflow to DSL2? #88

Open scontente opened 1 year ago

scontente commented 1 year ago

Currently, this pipeline will not run on the latest version of Nextflow. The error message " Nextflow DSL1 is no longer supported — Update your script to DSL2, or use Nextflow 22.10.x or earlier", appears.

reganhayward commented 1 year ago

Hi there, Thanks for your message. Yes, this is currently being worked on by a number of people, you can see this from the activity in the dev branch. As you can imagine, there is a considerable amount of work required, and hopefully this will be completed soon!

scontente commented 1 year ago

Thank you!  Understand how much work goes into an effort like this. On Jun 26, 2023, at 3:11 AM, reganhayward @.***> wrote: Hi there, Thanks for your message. Yes, this is currently being worked on by a number of people, you can see this from the activity in the dev branch. As you can imagine, there is a considerable amount of work required, and hopefully this will be completed soon!

—Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you authored the thread.Message ID: @.***>

IsabelFE commented 3 days ago

Are there any updates on the DSL2 version of this pipeline?

reganhayward commented 3 days ago

Yes - being worked on currently, but only as a single person. I'm hesitant to give an exact timeframe, but should be soon!

IsabelFE commented 3 days ago

@reganhayward, thanks for your work!!