Closed TCLamnidis closed 1 year ago
nf-core linting works locally. Issue seems to be the new template release.
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 7c2ba6a
+| ✅ 156 tests passed |+
!| ❗ 18 tests had warnings |!
Added
addNewMetaFromAttributes
, a function that can be applied with.map
to create/replace a meta with renamed attributes. Then added using that instead of the repetitive channel operations we were doing before.This does not seem to break
-resume
at all. For each instance of replacing the old channel operations, I reran the pipeline with-resume
with parameters that would use the new implementation. All jobs were cached without issue.I might have missed some use cases of the old channel operations somewhere. I should have gotten all the local subworkflows at least.
PR checklist
nf-core lint .
).nextflow run . -profile test,docker
).