Closed TCLamnidis closed 11 months ago
I have checked the following places for your error:
When using bowtie2 as the mapper, and not providing a fasta index already, damageprofiler and genotyping is not executed, because the fasta_index is not generated at all.
Steps to reproduce the behaviour:
nextflow run nf-core/eager -r 2.4.7 -profile test,docker --mapper 'bowtie2' --run_genotyping --genotyping_tool 'ug'
No process for damageprofiler or genotyping_ug is submitted.
damageprofiler
genotyping_ug
Process for damageprofiler or genotyping_ug is submitted.
Have you provided the following extra information/files:
.nextflow.log
Check Documentation
I have checked the following places for your error:
Description of the bug
When using bowtie2 as the mapper, and not providing a fasta index already, damageprofiler and genotyping is not executed, because the fasta_index is not generated at all.
Steps to reproduce
Steps to reproduce the behaviour:
nextflow run nf-core/eager -r 2.4.7 -profile test,docker --mapper 'bowtie2' --run_genotyping --genotyping_tool 'ug'
No process for
damageprofiler
orgenotyping_ug
is submitted.Expected behaviour
Process for
damageprofiler
orgenotyping_ug
is submitted.Log files
Have you provided the following extra information/files:
.nextflow.log
fileSystem
Nextflow Installation
Container engine
Additional context