search

nf-core / eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline
https://nf-co.re/eager
MIT License
143 stars 80 forks source link

DSL2: add circularmapper module #1033

Closed shyama-mama closed 1 month ago

shyama-mama commented 11 months ago

for parity with eager2

shyama-mama commented 11 months ago

Looks like CircularMapper does not already have a nf-core module. Will need to make one following the tutorial here. https://nf-co.re/docs/contributing/tutorials/dsl2_modules_tutorial

shyama-mama commented 10 months ago

I've made a pull request on nf-core modules here for circular mapper: https://github.com/nf-core/modules/pull/4320

There are some strange errors with pytests even though they work fine locally. Awaiting help from nf-core devs.

TCLamnidis commented 10 months ago

ok. They are currently migrating to nf-tests, so you could try to set up those instead of using pytest potentially.