DSL2: Add library merge step after damage_manipulation

nf-core / eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

https://nf-co.re/eager

MIT License

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DSL2: Add library merge step after damage_manipulation #1039

Closed TCLamnidis closed 6 months ago

TCLamnidis commented 8 months ago

Currently, lanes are merged after mapping to the library level. Deduplication and damage manipulation take place at this granularity, but genotyping onwards should happen AFTER merging libraries to the sample level.

TCLamnidis commented 6 months ago

Addressed in #1043.