Meriam reported an issue with vcf2genome in the slack channel, where the output of one sample would overwrite the output of another. It turned out to be because of the parameter --vcf2genome_outfile which sets the output file name.
Removing this parameter fixed the issue, with each sample getting its own file. The parameter is therefore unintuitive and should be rethought if not deprecated.
TCLamnidis
commented
7 months ago
Meriam reported an issue with vcf2genome in the slack channel, where the output of one sample would overwrite the output of another. It turned out to be because of the parameter
--vcf2genome_outfilewhich sets the output file name.Removing this parameter fixed the issue, with each sample getting its own file. The parameter is therefore unintuitive and should be rethought if not deprecated.