search

nf-core / eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline
https://nf-co.re/eager
MIT License
128 stars 78 forks source link

CRAM output #1059

Open TCLamnidis opened 3 months ago

TCLamnidis commented 3 months ago

It would be nice to either swap to CRAM files, or offer that as an option.

jfy133 commented 3 months ago

This is going to be extremely difficult I think, because many of our tools are very old and out of date...