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nf-core / eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline
https://nf-co.re/eager
MIT License
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Update sequenceTools #829

Closed stschiff closed 2 years ago

stschiff commented 2 years ago

Hi team,

I've updated the sequenceTools package on bioconda a while ago to version 1.5.1, which among other improvements now has Plink output support. Please update the version shipped with the nf-core/eager pipeline.

Thank you!

TCLamnidis commented 2 years ago

v1.5.2 just released with a bugfix that is important when users use a Reference file that includes lowercase (soft-masked) positions, like the one provided by UCSC.

https://github.com/stschiff/sequenceTools/releases/tag/v1.5.2